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Intelligent Informatics Lab

Key Laboratory of Systems Biology,

Shanghai Institutes for Biological Sciences,

 Chinese Academy of Sciences

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  • MDCinfer (Inferring protein-protein interactions based on multi-domain Cooperation)
  • TRNInfer (Inferring transcriptional regulatory networks from high-throughput data)
  • MetaILP (Detecting drug targets in metabolic networks by integer linear programming)
  • MILPs (Identifying differentially expressed pathways via a mixed integer linear programming model)
  • PRNA (Prediction of protein-RNA binding sites by a random forest method with combined features)
  • SANA (Protein Structure Alignment by Neighborhood Alignment)
  • FPPI  (Fusarium graminearum Protein-Protein Interactions)
  • NOA (NOA: Network Ontology Analysis)
  • ModifiedBIRS (Feature Selection for PDZ domain-Peptide Interaction Prediction).
  • MCentridFS (Multi-class Centroid Feature Selection)
  • PMNminer (Progressive module network analysis)