Publications of ChenLab

　

Key Laboratory of Systems Biology,

Shanghai Institutes for Biological Sciences,

Chinese Academy of Sciences

　

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Samo (Protein Structure Alignment tool based on Multiple Objective optimization)

PTG (Parsimonious Tree-Grow method for haplotype inference)

GRNInfer (Gene Regulatory Network Inference Tool)

InferPPI (Inferring protein-protein interactions by parsimony principle)

GNTInfer (Gene Regulatory Network Reconstruction Tool with compound Targets)

AGPS (Annotating Genes with Positive Samples)

MNAligner (Molecular Network `Aligner')

MDCinfer (Inferring protein-protein interactions based on multi-domain Cooperation)

TRNInfer (Inferring transcriptional regulatory networks from high-throughput data)

MetaILP (Detecting drug targets in metabolic networks by integer linear programming)

MILPs (Identifying differentially expressed pathways via a mixed integer linear programming model)

PRNA (Prediction of protein-RNA binding sites by a random forest method with combined features)

SANA (Protein Structure Alignment by Neighborhood Alignment)

FPPI (Fusarium graminearum Protein-Protein Interactions)

NOA (NOA: Network Ontology Analysis)

ModifiedBIRS(Feature Selection for PDZ domain-Peptide Interaction Prediction).